{ "_id": "6a55fb52ff0138dec5d6b525", "Package": "mccount", "Title": "Estimate Recurrent Event Burden with Competing Risks", "Version": "0.1.1.9000", "Authors@R": "person(\"Kenneth A.\", \"Taylor\", , \"kenneth.taylor.dpt@gmail.com\", role = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0000-0002-3205-9280\"))", "Description": "Calculates mean cumulative count (MCC) to estimate the\nexpected cumulative number of recurrent events per person over\ntime in the presence of competing risks and censoring.\nImplements both the Dong-Yasui equation method and sum of\ncumulative incidence method described in Dong, et al. (2015)\n. Supports inverse probability\nweighting for causal inference as outlined in Gaber, et al.\n(2023) . Provides S3 methods for\nprinting, summarizing, plotting, and extracting results.\nHandles grouped analyses and integrates with 'ggplot2'\n for visualization.", "License": "MIT + file LICENSE", "URL": "https://github.com/KennethATaylor/mccount,\nhttps://kennethataylor.github.io/mccount/", "BugReports": "https://github.com/KennethATaylor/mccount/issues", "Config/testthat/edition": "3", "Encoding": "UTF-8", "Language": "en-US", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.3", "Config/Needs/website": "rmarkdown", "VignetteBuilder": "knitr", "Config/pak/sysreqs": "libicu-dev", "Repository": "https://kennethataylor.r-universe.dev", "Date/Publication": "2025-11-14 14:01:35 UTC", "RemoteUrl": "https://github.com/kennethataylor/mccount", "RemoteRef": "HEAD", "RemoteSha": "e2222cbf5c2942fa42709a53d3083a36d6520226", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-14 08:57:28 UTC", "User": "root" }, "Author": "Kenneth A. Taylor [aut, cre, cph] (ORCID:\n)", "Maintainer": "Kenneth A. Taylor ", "_user": "kennethataylor", "_type": "src", "_file": "mccount_0.1.1.9000.tar.gz", "_fileid": "https://r2.ropensci.org/c9df84b81f7a232578b755ed327999a88e8d57ee1f6fc73f7c8f351bfd5dfc55", "_filesize": 1490433, "_sha256": "c9df84b81f7a232578b755ed327999a88e8d57ee1f6fc73f7c8f351bfd5dfc55", "_expires": "2026-10-22T09:03:11.000Z", "_created": "2026-07-14T08:57:28.000Z", "_published": "2026-07-14T09:03:13.884Z", "_jobs": [ { "job": 87042584776, "time": 183, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "8305538645" }, { "job": 87042584671, "time": 176, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "8305535660" }, { "job": 87042584693, "time": 123, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "8305588757" }, { "job": 87042584719, "time": 106, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "8305584215" }, { "job": 87041878118, "time": 210, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8305461260" }, { "job": 87042584685, "time": 130, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8305517014" }, { "job": 87042584731, "time": 125, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "8305515675" }, { "job": 87042584967, "time": 139, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "8305521876" }, { "job": 87042584734, "time": 119, "config": "windows-release", "r": "4.6.1", "check": "OK", "artifact": "8305512910" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/kennethataylor/actions/runs/29319696338", "_status": "success", "_upstream": "https://github.com/kennethataylor/mccount", "_commit": { "id": "e2222cbf5c2942fa42709a53d3083a36d6520226", "author": "Ken Taylor ", "committer": "Ken Taylor ", "message": "Minor edits to vignette\n", "time": 1763128895 }, "_maintainer": { "name": "Kenneth A. Taylor", "email": "kenneth.taylor.dpt@gmail.com", "login": "kennethataylor", "orcid": "0000-0002-3205-9280", "description": "", "uuid": 110407869 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.1.0", "role": "Depends" }, { "package": "cards", "role": "Imports" }, { "package": "cli", "role": "Imports" }, { "package": "cmprsk", "role": "Imports" }, { "package": "data.table", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "glue", "role": "Imports" }, { "package": "lifecycle", "role": "Imports" }, { "package": "rlang", "role": "Imports" }, { "package": "stringr", "role": "Imports" }, { "package": "tibble", "role": "Imports" }, { "package": "tidyr", "role": "Imports" }, { "package": "boot", "role": "Suggests" }, { "package": "ggplot2", "version": ">= 3.5.0", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "MatchIt", "role": "Suggests" }, { "package": "mstate", "role": "Suggests" }, { "package": "optmatch", "role": "Suggests" }, { "package": "patchwork", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "spelling", "role": "Suggests" }, { "package": "survival", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" }, { "package": "WeightIt", "role": "Suggests" }, { "package": "withr", "role": "Suggests" } ], "_owner": "kennethataylor", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-34", "n": 6 }, { "week": "2025-36", "n": 1 }, { "week": "2025-45", "n": 7 }, { "week": "2025-46", "n": 10 } ], "_tags": [ { "name": "v0.1.1", "date": "2025-11-10" } ], "_topics": [ "biostatistics", "censoring-events", "competing-risks", "epidemiology", "mean-cumulative-count", "mean-cumulative-function", "recurrent-events" ], "_stars": 2, "_contributors": [ { "user": "kennethataylor", "count": 106, "uuid": 110407869 } ], "_userbio": { "uuid": 110407869, "type": "user", "name": "Ken Taylor", "followers": 7 }, "_downloads": { "count": 236, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/mccount" }, "_devurl": "https://github.com/kennethataylor/mccount", "_pkgdown": "https://kennethataylor.github.io/mccount/", "_searchresults": 5, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/mccount.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "LICENSE", "manual.pdf" ], "_homeurl": "https://github.com/kennethataylor/mccount", "_realowner": "kennethataylor", "_cranurl": true, "_releases": [ { "version": "0.1.1", "date": "2025-11-13" } ], "_exports": [ "as_mcc", "compare_mcc", "filter_mcc", "geom_line_mcc", "is_grouped", "is_mcc", "is_weighted", "mcc", "mcc_details", "mcc_estimates", "mcc_final_values", "mcc_grouping_var", "mcc_groups", "mcc_method" ], "_help": [ { "page": "as_mcc", "title": "Convert objects to 'mcc' class", "topics": [ "as_mcc" ] }, { "page": "as.data.frame.mcc", "title": "Convert 'mcc' object to data.frame", "topics": [ "as.data.frame.mcc" ] }, { "page": "autoplot.mcc", "title": "Auto-plot method for 'mcc' objects", "topics": [ "autoplot.mcc" ] }, { "page": "compare_mcc", "title": "Compare 'mcc' objects", "topics": [ "compare_mcc" ] }, { "page": "filter_mcc", "title": "Filter 'mcc' object by groups", "topics": [ "filter_mcc" ] }, { "page": "geom_line_mcc", "title": "Add Reference Lines at an MCC Threshold to ggplot2 Objects", "topics": [ "geom_line_mcc" ] }, { "page": "is_grouped", "title": "Check if 'mcc' object is from grouped analysis", "topics": [ "is_grouped" ] }, { "page": "is_mcc", "title": "Check if object is an 'mcc' result", "topics": [ "is_mcc" ] }, { "page": "is_weighted", "title": "Check if 'mcc' object uses weighted estimation", "topics": [ "is_weighted" ] }, { "page": "mcc", "title": "Calculate Mean Cumulative Count (MCC)", "topics": [ "mcc" ] }, { "page": "mcc_details", "title": "Extract calculation details from 'mcc' objects", "topics": [ "mcc_details" ] }, { "page": "mcc_estimates", "title": "Extract MCC estimates from 'mcc' objects", "topics": [ "mcc_estimates" ] }, { "page": "mcc_final_values", "title": "Get final MCC value for each group", "topics": [ "mcc_final_values" ] }, { "page": "mcc_grouping_var", "title": "Get grouping variable name from grouped 'mcc' object", "topics": [ "mcc_grouping_var" ] }, { "page": "mcc_groups", "title": "Extract unique groups from grouped 'mcc' object", "topics": [ "mcc_groups" ] }, { "page": "mcc_method", "title": "Get the method used for MCC calculation", "topics": [ "mcc_method" ] }, { "page": "plot.mcc", "title": "Plot MCC results", "topics": [ "plot.mcc" ] }, { "page": "print.mcc", "title": "Print method for 'mcc' objects", "topics": [ "print.mcc" ] }, { "page": "print.mcc_comparison", "title": "Print method for MCC comparison objects", "topics": [ "print.mcc_comparison" ] }, { "page": "print.summary.mcc", "title": "Print method for 'mcc' summary objects", "topics": [ "print.summary.mcc" ] }, { "page": "summary.mcc", "title": "Summary method for 'mcc' objects", "topics": [ "summary.mcc" ] } ], "_pkglogo": "https://github.com/kennethataylor/mccount/raw/HEAD/man/figures/logo.png", "_readme": "https://github.com/kennethataylor/mccount/raw/HEAD/README.md", "_rundeps": [ "cards", "cli", "cmprsk", "cpp11", "data.table", "dplyr", "generics", "glue", "lattice", "lifecycle", "magrittr", "Matrix", "pillar", "pkgconfig", "purrr", "R6", "rlang", "stringi", "stringr", "survival", "tibble", "tidyr", "tidyselect", "utf8", "vctrs", "withr" ], "_vignettes": [ { "source": "choosing-between-methods.Rmd", "filename": "choosing-between-methods.html", "title": "Choosing Between Methods", "engine": "knitr::rmarkdown", "headings": [ "Two Approaches, Same Goal", "When Methods Are Equivalent", "Administrative Censoring Only", "Synchronized Event-Interval Censoring", "When Methods Differ and Why", "When Events Are Exchangeable", "When Event Order Matters", "Documenting Your Choice", "Special Case - Delayed Study Entry", "Summary" ], "created": "2025-09-04 05:38:09", "modified": "2025-09-04 05:38:09", "commits": 1 }, { "source": "estimating-mcc-after-matching-or-weighting.Rmd", "filename": "estimating-mcc-after-matching-or-weighting.html", "title": "Estimating MCC After Matching or Weighting", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "When to Use Weights with MCC", "Inverse Probability of Treatment Weighting (IPTW)", "Step 1: Estimate Propensity Scores and Create Weights", "Step 2: Estimate Weighted MCC", "Step 3: Compare Weighted vs Unweighted Results", "Propensity Score Matching", "Important Note on Matching Weights", "Example: 1:1 Nearest Neighbor Matching (No Weights Needed)", "Example: Full Matching with Weights", "Visualization of Weighted/Matched Results", "Key Interpretation Points", "Causal vs Descriptive Interpretation", "Assumptions", "Stabilized vs Unstabilized Weights", "Not Covered", "Summary" ], "created": "2025-11-04 18:56:31", "modified": "2025-11-14 14:01:35", "commits": 2 } ], "_score": 4.903089986991944, "_indexed": true, "_nocasepkg": "mccount", "_universes": [ "kennethataylor" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.1.9000", "date": "2026-07-14T08:59:57.000Z", "distro": "resolute", "commit": "e2222cbf5c2942fa42709a53d3083a36d6520226", "fileid": "https://r2.ropensci.org/51f190d2aca4dc0f900909d63c8abff70b7d148addeb3164e670bf1a1e710e47", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kennethataylor/actions/runs/29319696338" }, { "r": "4.6.1", "os": "linux", "version": "0.1.1.9000", "date": "2026-07-14T08:59:55.000Z", "distro": "resolute", "commit": "e2222cbf5c2942fa42709a53d3083a36d6520226", "fileid": "https://r2.ropensci.org/4d309a0a600e5ecc6f3a8b0e70f8843d449ebc66e1b5f9c39d4633dcddda546b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kennethataylor/actions/runs/29319696338" }, { "r": "4.5.3", "os": "mac", "version": "0.1.1.9000", "date": "2026-07-14T09:02:11.000Z", "commit": "e2222cbf5c2942fa42709a53d3083a36d6520226", "fileid": "https://r2.ropensci.org/ea37717725d1f4c20902b50b1a6f3aec99b7c6512bcd7e381acadbb31400cd8f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kennethataylor/actions/runs/29319696338" }, { "r": "4.6.1", "os": "mac", "version": "0.1.1.9000", "date": "2026-07-14T09:02:08.000Z", "commit": "e2222cbf5c2942fa42709a53d3083a36d6520226", "fileid": "https://r2.ropensci.org/8b93639b14129f5f21c66ca0b661f19636880a6efb56d1dda63b3c11b030f81f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kennethataylor/actions/runs/29319696338" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.1.9000", "date": "2026-07-14T08:59:56.000Z", "commit": "e2222cbf5c2942fa42709a53d3083a36d6520226", "fileid": "https://r2.ropensci.org/38f5a194dd8e63e89136f4635b67c178eb85c238f8e8680528db074cb27e87a0", "status": "success", "buildurl": "https://github.com/r-universe/kennethataylor/actions/runs/29319696338" }, { "r": "4.7.0", "os": "win", "version": "0.1.1.9000", "date": "2026-07-14T08:58:49.000Z", "commit": "e2222cbf5c2942fa42709a53d3083a36d6520226", "fileid": "https://r2.ropensci.org/b475cec074960fece6ad118f7d0719304cfcd1b6f7e440a2f773c84a258ac442", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kennethataylor/actions/runs/29319696338" }, { "r": "4.5.3", "os": "win", "version": "0.1.1.9000", "date": "2026-07-14T08:59:10.000Z", "commit": "e2222cbf5c2942fa42709a53d3083a36d6520226", "fileid": "https://r2.ropensci.org/1fb15f808450091012943750eea8db543ea1aae5b4370fdf718c464aacb98684", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kennethataylor/actions/runs/29319696338" }, { "r": "4.6.1", "os": "win", "version": "0.1.1.9000", "date": "2026-07-14T08:58:55.000Z", "commit": "e2222cbf5c2942fa42709a53d3083a36d6520226", "fileid": "https://r2.ropensci.org/3b1aabf7eb7f46a45002d9db7daf683d14d791e9a8e40154caa0728fb1a78a8a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/kennethataylor/actions/runs/29319696338" } ] }